Datasets Join the group
Most dataset repositories and registries of dataset do not provide structured data easily crawlable by search engines. Registries like DataMed, OMICsDI and BioSamples do automated ingestion of content mainly through APIs but not all the data repositories have a programmatic interface and the existing variety of programmatic interfaces are subject to changes which break integration workflows.
Objectives
- Facilitate the ingestion of datasets metadata from data repositories (databases) into search engines and dataset registries like OMICsDI and DataMed via Bioschemas
- Automate the linking of datasets metadata to samples in dataset registries like Biosamples, and identify cases where samples are missing or metadata is absent.
- Engage and help data providers to test and adopt the exposure of dataset metadata Bioschemas
- Contribute to increase the number of indexed data repositories via Bioschemas.
- Make dataset registries compliant with Bioschemas.
Profiles
Dataset
- Latest Release: (version 1.0-RELEASE)
- Latest Draft: (version 0.5-DRAFT)
DataRecord
- Latest Draft: (version 0.2-DRAFT-2019_06_14)
Types
DataRecord
- Latest Draft: (version 0.3-DRAFT-2019_06_20)
Group Leaders
Group Members
- Niall Beard
- Philippe Rocca-Serra
- Susheel Varma
- Liz Williams
- Anil Wipat
- Peter McQuilton
- Gianluigi Zanetti
- Ethy Cannon
- Vicky Schneider
- Andra Waagmeester
- Heimo Müller
- Justin Clark-Casey
- Morris Swertz
- Ankit Kumar Lohani
- Dan Timmons
- Alejandra Gonzalez-Beltran
- Guillermo Calderon Mantilla
- Alasdair Gray
- Jeffrey Grethe
- Kaisa Silander
- Carole Goble
- Petr Holb
- Gos Micklem
- Michel Dumontier
- Haydee Artaza
- David van Enckevort