RNA DRAFT Profile
Version: 0.1-DRAFT-2019_11_15 (15 November 2019)
If you spot any errors or omissions with this type, please file an issue in our GitHub.
| Group | Use Cases | Cross Walk | Task & Issues | Examples | Live Deploys |
|---|---|---|---|---|---|
|
|
|
|
|
You can read the release version of this specification here.
Key to specification table
- Green properties/types are proposed by Bioschemas, or indicate proposed changes by Bioschemas to Schema.org
- Red properties/types exist in the core of Schema.org
- Blue properties/types exist in the pending area of Schema.org
- Black properties/types are reused from external vocabularies/ontologies
CD = Cardinality
| Property | Expected Type | Description | CD | Controlled Vocabulary | Example |
|---|---|---|---|---|---|
| Marginality: Minimum. | |||||
| @context | URL | Used to provide the context (namespaces) for the JSON-LD file. Not needed in other serialisations. |
ONE | ||
| @type | Text | Schema.org/Bioschemas class for the resource declared using JSON-LD syntax. For other serialisations please use the appropriate mechanism. While it is permissible to provide multiple types, it is preferred to use a single type. |
MANY | Schema.org, Bioschemas | |
| @id | IRI | Used to distinguish the resource being described in JSON-LD. For other serialisations use the appropriate approach. | ONE | ||
| dct:conformsTo | IRI | Used to state the Bioschemas profile that the markup relates to. The versioned URL of the profile must be used. Note that we use a CURIE in the table here but the full URL for Dublin Core terms must be used in the markup (http://purl.org/dc/terms/conformsTo), see example. |
ONE | Bioschemas profile versioned URL | |
| Marginality: Optional. | |||||
| additionalType |
URL |
Schema: An additional type for the item, typically used for adding more specific types from external vocabularies in microdata syntax. This is a relationship between something and a class that the thing is in. In RDFa syntax, it is better to use the native RDFa syntax - the ‘typeof’ attribute - for multiple types. Schema.org tools may have only weaker understanding of extra types, in particular those defined externally. |
ONE | ||
| alternateName |
Text |
Schema: An alias for the item. |
|||
| associatedDisease |
MedicalCondition PropertyValue URL |
Schema: Disease associated to this BioChemEntity. Such disease can be a MedicalCondition or a URL. If you want to add an evidence supporting the association, please use PropertyValue. |
|||
| bioChemInteraction |
BioChemEntity |
Schema: A BioChemEntity that is known to interact with this item. |
|||
| bioChemSimilarity |
BioChemEntity |
Schema: A similar molecular entity, e.g., obtained by fingerprint similarity algorithms. |
|||
| biologicalRole |
DefinedTerm |
Schema: A role played by the molecular entity within a biological context. |
|||
| description |
Text |
Schema: A description of the item. |
|||
| disambiguatingDescription |
Text |
Schema: A sub property of description. A short description of the item used to disambiguate from other, similar items. Information from other properties (in particular, name) may be necessary for the description to be useful for disambiguation. |
|||
| encodesBioChemEntity |
BioChemEntity |
Schema: Another BioChemEntity encoded by this one. Inverse property:isEncodedByBioChemEntity. |
|||
| hasBioChemEntityPart |
BioChemEntity |
Schema: Indicates a BioChemEntity that (in some sense) has this BioChemEntity as a part. Inverse property:isPartOfBioChemEntity. |
|||
| hasMolecularFunction |
DefinedTerm PropertyValue URL |
Schema: Molecular function performed by this BioChemEntity; please use PropertyValue if you want to include any evidence. |
|||
| hasRepresentation |
PropertyValue Text URL |
Schema: A common representation such as a protein sequence or chemical structure for this entity. For images use schema.org/image. |
|||
| hasSequence |
Text |
Schema: Nucleotide or amino acid sequence. |
|||
| hasSequenceAnnotation |
PropertyValue SequenceAnnotation |
Schema: Pointer to a sequence annotation; please use PropertyValue if you want to include any evidence. |
|||
| identifier |
PropertyValue Text URL |
Schema: The identifier property represents any kind of identifier for any kind ofThing, such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. Seebackground notesfor more details. |
|||
| image |
ImageObject URL |
Schema: An image of the item. This can be aURLor a fully describedImageObject. |
|||
| isCodingRNA |
Boolean |
Schema: Indicates whether or not this RNA is a coding one. |
|||
| isEncodedByBioChemEntity |
DNA Gene RNA |
Schema: Another BioChemEntity encoding by this one. Inverse property:encodesBioChemEntity. |
|||
| isInvolvedInBiologicalProcess |
DefinedTerm PropertyValue URL |
Schema: Biological process this BioChemEntity is involved in; please use PropertyValue if you want to include any evidence. |
|||
| isLocatedInSubcellularLocation |
DefinedTerm PropertyValue URL |
Schema: Subcellular location where this BioChemEntity is located; please use PropertyValue if you want to include any evidence. |
ONE | ||
| isMatchedBy |
SequenceMatchingModel |
Schema: A model matching this BioChemEntity. |
ONE | ||
| isPartOfBioChemEntity |
BioChemEntity |
Schema: Indicates a BioChemEntity that is (in some sense) a part of this BioChemEntity. Inverse property:hasBioChemEntityPart. |
ONE | ||
| name |
Text |
Schema: The name of the item. |
|||
| sameAs |
URL |
Schema: URL of a reference Web page that unambiguously indicates the item’s identity. E.g. the URL of the item’s Wikipedia page, Wikidata entry, or official website. |
|||
| taxonomicRange |
DefinedTerm Taxon Text URL |
Schema: The taxonomic grouping of the organism that expresses, encodes, or in someway related to the BioChemEntity. |
ONE | ||
| url |
URL |
Schema: URL of the item. |
|||